DNA Computing and Molecular Programming: 16th International by Yuriy Brun (auth.), Yasubumi Sakakibara, Yongli Mi (eds.)

By Yuriy Brun (auth.), Yasubumi Sakakibara, Yongli Mi (eds.)

This publication constitutes the completely refereed post-conference
proceedings of the sixteenth overseas convention on DNA Computing and Molecular Programming, DNA16, held in Hong Kong, China, in June 2010.

The sixteen revised complete papers provided have been conscientiously chosen in the course of rounds of reviewing and development from fifty nine submissions. The papers are good balanced among theoretical and experimental paintings and deal with all components that relate to biomolecular computing, together with demonstrations of biomolecular computing, theoretical versions of biomolecular computing, biomolecular algorithms, computational approaches in vitro and in vivo, research and theoretical versions of laboratory thoughts, biotechnological and different functions of DNA computing, DNA nanostructures, DNA units reminiscent of DNA cars, DNA blunders assessment and correction, in vitro evolution, molecular layout, self-assembled platforms, nucleic acid chemistry, and simulation tools.

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Additional resources for DNA Computing and Molecular Programming: 16th International Conference, DNA 16, Hong Kong, China, June 14-17, 2010, Revised Selected Papers

Sample text

Randomized self-assembly for exact shapes. In: Proceedings of the 50th Annual IEEE Symposium on Foundations of Computer Science, pp. 85–94 (2009) 12. : Self-assembly of DNA into nanoscale three-dimensional shapes. -L. -Y. Kao 13. : Coordinated chemomechanical cycles: a mechanism for autonomous molecular motion. Physical Review Letters (101), 238101 (2008) 14. : Compact error-resilient computational DNA tiling assemblies. , Zandron, C. ) DNA 2004. LNCS, vol. 3384, pp. 293–307. Springer, Heidelberg (2005) 15.

293–307. Springer, Heidelberg (2005) 15. : Reducing tile complexity for self-assembly through temperature programming. In: Proceedings of the 17th Annual ACM-SIAM Symposium on Discrete Algorithms, pp. 571–580 (2006) 16. : 2D DNA self-assembly for satisfiability. In: Proceedings of the 5th DIMACS Workshop on DNA Based Computers. DIMACS Series in Discrete Mathematics and Theoretical Computer Science, vol. 54, pp. 141–154 (1999) 17. : The program-size complexity of self-assembled squares (extended abstract).

1(b). t3 t3 t2 t0 t1 t3 t2 t0 t1 t3 t2 t1 t2 t0 t1 t3 t2 t0 t1 t0 t0 (a) Reversible model, as defined in [4]. t3 t2 t1 (b) Irreversible model. Fig. 1. Two different implementations of negative interactions at temperature 2. The slanted bonds represent a strength of −1. In the reversible model, the tile t3 can attach with a total strength of 1 (one bond of strength 2 and one of strength −1) and hence is unstable, while with our definition, t3 is attached with a total strength of 2 and forces t0 to detach.

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